Habitat use of Bornean Orangutans (<Emphasis Type="Italic">Pongo pygmaeus morio</Emphasis>) in an Industrial Forestry Plantation in East Kalimantan,Indonesia

Many primates now live in anthropogenic landscapes dominated by human activity such as agriculture. Conserving primates in such contexts requires detailed information about habitat use, including landscape features that may influence population viability. We studied Northeast Bornean orangutan (Pongo pygmaeus morio) habitat use in a forestry plantation in East Kalimantan, Indonesia. We conducted camera trapping and nest surveys at 13 locations across three habitat types in the plantation (planted acacia stands, planted eucalyptus stands, and secondary forest patches left uncut or allowed to regenerate) September 2012–March 2013, and calculated four measures of orangutan abundance for each location (independent photo captures/100 camera trap days, or RAI₂; nest encounter rate; nest density; and orangutan density). Orangutans are relatively common in the plantation; they used all three habitat types and exhibited a higher RAI₂ than 70% of other mammal species detected. A logistic regression found that proximity to natural forest areas best predicted orangutan abundance calculated using camera trap data (RAI₂) but that habitat type combined with distance to natural forest best predicted orangutan abundance calculated using nest counts. This suggests that orangutans use planted areas for movement and feeding, but rely on patches of natural forest for resting and access to key resources. Our study and others indicate that orangutans can coexist with some human activities if provided with sufficient access to natural forest. However, we must conduct further research to facilitate effective conservation planning, including gathering additional details about habitat and resource use and possible long-term population impacts.     

SIRT1 regulates macrophage self‐renewal

Mature differentiated macrophages can self‐maintain by local proliferation in tissues and can be extensively expanded in culture under specific conditions, but the mechanisms of this phenomenon remain only partially defined. Here, we show that SIRT1, an evolutionary conserved regulator of life span, positively affects macrophage self‐renewal ability in vitro and in vivo. Overexpression of SIRT1 during bone marrow‐derived macrophage differentiation increased their proliferative capacity. Conversely, decrease of SIRT1 expression by shRNA inactivation, CRISPR/Cas9 mediated deletion and pharmacological inhibition restricted macrophage self‐renewal in culture. Furthermore, pharmacological SIRT1 inhibition in vivo reduced steady state and cytokine‐induced proliferation of alveolar and peritoneal macrophages. Mechanistically, SIRT1 inhibition negatively regulated G1/S transition, cell cycle progression and a network of self‐renewal genes. This included inhibition of E2F1 and Myc and concomitant activation of FoxO1, SIRT1 targets mediating cell cycle progression and stress response, respectively. Our findings indicate that SIRT1 is a key regulator of macrophage self‐renewal that integrates cell cycle and longevity pathways. This suggests that macrophage self‐renewal might be a relevant parameter of ageing.     

Foliage affects colour preference in bumblebees (<Emphasis Type="Italic">Bombus impatiens</Emphasis>): a test in a three-dimensional artificial environment

Red flowers are a defining character of the bird-pollination syndrome. Birds do not, however, innately prefer red, suggesting that rather than attracting birds, red flowers may serve to exclude other visitors (e.g., bumblebees). Bees are sometimes considered “blind” to red, but studies have in fact documented both blue and red preferences in various bee species. These mixed results may be an effect of overly simplistic lab settings. We hypothesized that bees might readily locate red flowers in a simple laboratory environment, but struggle to find the same flowers in a complex, foliated setting. We tested the effects of environmental complexity on visitation to red and blue artificial flowers and on the foraging rate of captive worker bumblebees (Bombus impatiens). Bees made significantly fewer visits to red flowers when foraging in a complex environment with artificial green foliage, suggesting that red becomes harder to locate in this context than in a simple, leafless environment. Bees also foraged more slowly, on average, in the complex environment, although the difference was apparent only among experienced bees. Our findings provide a possible explanation for previous laboratory tests finding no colour preference in bumblebees. This “contextual colour-blindness” of bees supports the hypothesis that red evolved as a mechanism for plants to avoid visitation by bees, favouring bird pollination instead.     

A multi-trait systems approach reveals a response cascade to bleaching in corals

Background

Climate change causes the breakdown of the symbiotic relationships between reef-building corals and their photosynthetic symbionts (genus Symbiodinium), with thermal anomalies in 2015–2016 triggering the most widespread mass coral bleaching on record and unprecedented mortality on the Great Barrier Reef. Targeted studies using specific coral stress indicators have highlighted the complexity of the physiological processes occurring during thermal stress, but have been unable to provide a clear mechanistic understanding of coral bleaching.

Results

Here, we present an extensive multi-trait-based study in which we compare the thermal stress responses of two phylogenetically distinct and widely distributed coral species, Acropora millepora and Stylophora pistillata, integrating 14 individual stress indicators over time across a simulated thermal anomaly. We found that key stress responses were conserved across both taxa, with the loss of symbionts and the activation of antioxidant mechanisms occurring well before collapse of the physiological parameters, including gross oxygen production and chlorophyll a. Our study also revealed species-specific traits, including differences in the timing of antioxidant regulation, as well as drastic differences in the production of the sulfur compound dimethylsulfoniopropionate during bleaching. Indeed, the concentration of this antioxidant increased two-fold in A. millepora after the corals started to bleach, while it decreased 70% in S. pistillata.

Conclusions

We identify a well-defined cascading response to thermal stress, demarking clear pathophysiological reactions conserved across the two species, which might be central to fully understanding the mechanisms triggering thermally induced coral bleaching. These results highlight that bleaching is a conserved mechanism, but specific adaptations linked to the coral’s antioxidant capacity drive differences in the sensitivity and thus tolerance of each coral species to thermal stress.

     

Evolution of Hot Polaron States with a Nanosecond Lifetime in a Manganite Perovskite

Understanding and controlling the relaxation process of optically excited charge carriers in solids with strong correlations is of great interest in the quest for new strategies to exploit solar energy. Usually, optically excited electrons in a solid thermalize rapidly on a femtosecond to picosecond timescale due to interactions with other electrons and phonons. New mechanisms to slow down thermalization will thus be of great significance for efficient light energy conversion, e.g., in photovoltaic devices. Ultrafast optical pump–probe experiments in the manganite Pr_0.65Ca_0.35MnO_3, a photovoltaic, thermoelectric, and electrocatalytic material with strong polaronic correlations, reveal an ultraslow recombination dynamics on a nanosecond‐time scale. The nature of long living excitations is further elucidated by photovoltaic measurements, showing the presence of photodiffusion of excited electron–hole polaron pairs. Theoretical considerations suggest that the excited charge carriers are trapped in a hot polaron state. Escape from this state is possible via a slow dipole‐forbidden recombination process or via rare thermal fluctuations toward a conical intersection followed by a radiation‐less decay. The strong correlation between the excited polaron and the octahedral dynamics of its environment appears to be substantial for stabilizing the hot polaron.     

Modeling the behavior of human induced pluripotent stem cells seeded on melt electrospun scaffolds

Background

Human induced pluripotent stem cells (hiPSCs) can form any tissue found in the body, making them attractive for regenerative medicine applications. Seeding hiPSC aggregates into biomaterial scaffolds can control their differentiation into specific tissue types. Here we develop and analyze a mathematical model of hiPSC aggregate behavior when seeded on melt electrospun scaffolds with defined topography.

Results

We used ordinary differential equations to model the different cellular populations (stem, progenitor, differentiated) present in our scaffolds based on experimental results and published literature. Our model successfully captures qualitative features of the cellular dynamics observed experimentally. We determined the optimal parameter sets to maximize specific cellular populations experimentally, showing that a physiologic oxygen level (～?5%) increases the number of neural progenitors and differentiated neurons compared to atmospheric oxygen levels (～?21%) and a scaffold porosity of ～?63% maximizes aggregate size.

Conclusions

Our mathematical model determined the key factors controlling hiPSC behavior on melt electrospun scaffolds, enabling optimization of experimental parameters.

     

Study design and parameter estimability for spatial and temporal ecological models

The statistical tools available to ecologists are becoming increasingly sophisticated, allowing more complex, mechanistic models to be fit to ecological data. Such models have the potential to provide new insights into the processes underlying ecological patterns, but the inferences made are limited by the information in the data. Statistical nonestimability of model parameters due to insufficient information in the data is a problem too‐often ignored by ecologists employing complex models. Here, we show how a new statistical computing method called data cloning can be used to inform study design by assessing the estimability of parameters under different spatial and temporal scales of sampling. A case study of parasite transmission from farmed to wild salmon highlights that assessing the estimability of ecologically relevant parameters should be a key step when designing studies in which fitting complex mechanistic models is the end goal.